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dc.contributor.authorGörmüş, U.
dc.contributor.authorKasap, M.
dc.contributor.authorAkplnar, G.
dc.contributor.authorTuğtepe, H.
dc.contributor.authorKanll, A.
dc.contributor.authorÖzel, K.
dc.date.accessioned2020-12-02T18:00:09Z
dc.date.available2020-12-02T18:00:09Z
dc.date.issued2020
dc.identifier.issn1422-6405
dc.identifier.urihttps://doi.org/10.1159/000506736
dc.identifier.urihttp://hdl.handle.net/11446/3544
dc.descriptionPubMed: 32259813en_US
dc.description.abstractUreteropelvic junction (UPJ) obstruction is a common problem in children, but its etiology remains unclear. in this study, the proteome profiles of the obstructed segment and its surrounding distal and proximal parts were comparatively evaluated. Twelve children younger than 2 years of age with unilateral intrinsic UPJ obstruction were included. the excised operational tissue was divided into three parts immediately after resection: the obstructed part (Obst), the distal normal ureteral part (Dist), and the proximal part of the obstructed segment (Prox). Proteins extracted from the tissue samples were subjected to two-dimensional gel electrophoresis analysis to identify differentially regulated proteins. Spot analysis revealed that four proteins, namely tropomyosin beta and alpha-1 chains, actin and desmin, were upregulated in Obst in comparison to Dist. A similar analysis between Obst and Prox showed that heat shock protein beta-1 and carbonic anhydrase-1 were upregulated in Obst, while tropomyosin alpha 3 chain and ATP synthase beta were upregulated in Prox. the last comparative analysis between Dist and Prox revealed upregulation of annexin-A5 and annexin-A1 in Dist and vimentin, mitochondrial ATP synthase subunit-beta, peroxiredoxin-2, and apolipoprotein-A1 in Prox. Bioinformatics analysis using the STRING server indicated that the differentially regulated proteins, altogether, point to the changes occurring in muscle filament sliding pathway. When regulations occurring in each group were mutually compared, a change in lipase inhibition activity was detected by STRING. This is the first study scrutinizing changes occurring in protein profiles in UPJ. © 2020 S. Karger AG, Basel.en_US
dc.description.sponsorshipIBU.0.20.00.00/207en_US
dc.description.sponsorshipThis study was supported by the Research Fund of Istanbul Bilim University (B.30.2.IBU.0.20.00.00/207).en_US
dc.language.isoengen_US
dc.publisherS. Karger AGen_US
dc.identifier.doi10.1159/000506736en_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectProteomicsen_US
dc.subjectSTRING analysisen_US
dc.subjectUreteropelvic junction obstructionen_US
dc.titleComparative Proteome Analyses of Ureteropelvic Junction Obstruction and Surrounding Ureteral Tissueen_US
dc.typearticleen_US
dc.relation.journalCells Tissues Organsen_US
dc.departmentDBÜen_US
dc.identifier.issue1en_US
dc.identifier.volume209en_US
dc.identifier.startpage2en_US
dc.identifier.endpage12en_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.department-tempGörmüş, U., Department of Medical Biochemistry, Faculty of Medicine, Istanbul Bilim University, Istanbul, Turkey, Division of Biochemistry, Department of Biochemistry and Biophysics (MBB), Karolinska Institute, Tomtebodavägen 16, Stockholm, SE-171 77, Sweden; Kasap, M., Department of Medical Biology and Genetic, DEKART Proteomics Laboratory, Faculty of Medicine, Kocaeli University, Kocaeli, Turkey; Akplnar, G., Department of Medical Biology and Genetic, DEKART Proteomics Laboratory, Faculty of Medicine, Kocaeli University, Kocaeli, Turkey; Tuğtepe, H., Division of Pediatric Urology, Department of Pediatric Surgery, Faculty of Medicine, Marmara University, Istanbul, Turkey; Kanll, A., Department of Medical Biology and Genetic, DEKART Proteomics Laboratory, Faculty of Medicine, Kocaelien_US


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